| Title | Variation in Sodic Soil Bacterial Communities Associated with Different Alkali Vegetation Types |
| Publication Type | Journal Article |
| Year of Publication | 2021 |
| Authors | Borsodi A.K, Mucsi M., Krett G., Szabo A., Felfoldi T., Szili-Kovacs T. |
| Journal | Microorganisms |
| Volume | 9 |
| Pagination | 19 |
| Date Published | Aug |
| Type of Article | Article |
| Accession Number | WOS:000690472100001 |
| Keywords | 16S rRNA gene, Bacterial diversity, catabolic activity, CULTIVATION, diversity, dynamics, growth, microbial communities, Microbiology, Pannonian steppe, plants, Pyrosequencing, rhizosphere, salinity, sp-nov., streptomyces, tolerance |
| Abstract | In this study, we examined the effect of salinity and alkalinity on the metabolic potential and taxonomic composition of microbiota inhabiting the sodic soils in different plant communities. The soil samples were collected in the Pannonian steppe (Hungary, Central Europe) under extreme dry and wet weather conditions. The metabolic profiles of microorganisms were analyzed using the MicroResp method, the bacterial diversity was assessed by cultivation and next-generation amplicon sequencing based on the 16S rRNA gene. Catabolic profiles of microbial communities varied primarily according to the alkali vegetation types. Most members of the strain collection were identified as plant associated and halophilic/alkaliphilic species of Micrococcus, Nesterenkonia, Nocardiopsis, Streptomyces (Actinobacteria) and Bacillus, Paenibacillus (Firmicutes) genera. Based on the pyrosequencing data, the relative abundance of the phyla Proteobacteria, Actinobacteria, Acidobacteria, Gemmatimonadetes and Bacteroidetes also changed mainly with the sample types, indicating distinctions within the compositions of bacterial communities according to the sodic soil alkalinity-salinity gradient. The effect of weather extremes was the most pronounced in the relative abundance of the phyla Actinobacteria and Acidobacteria. The type of alkali vegetation caused greater shifts in both the diversity and activity of sodic soil microbial communities than the extreme aridity and moisture.
|
| Short Title | MicroorganismsMicroorganisms |
| Alternate Journal | Microorganisms |
stdClass Object
(
[vid] => 678
[uid] => 11
[title] => Variation in Sodic Soil Bacterial Communities Associated with Different Alkali Vegetation Types
[log] =>
[status] => 1
[comment] => 0
[promote] => 1
[sticky] => 0
[nid] => 560
[type] => biblio
[language] => und
[created] => 1652363800
[changed] => 1652363800
[tnid] => 0
[translate] => 0
[revision_timestamp] => 1652363800
[revision_uid] => 11
[biblio_type] => 102
[biblio_number] => 8
[biblio_other_number] =>
[biblio_sort_title] => Variation in Sodic Soil Bacterial Communities Associated with Di
[biblio_secondary_title] => Microorganisms
[biblio_tertiary_title] =>
[biblio_edition] =>
[biblio_publisher] =>
[biblio_place_published] =>
[biblio_year] => 2021
[biblio_volume] => 9
[biblio_pages] => 19
[biblio_date] => Aug
[biblio_isbn] =>
[biblio_lang] => English
[biblio_abst_e] => In this study, we examined the effect of salinity and alkalinity on the metabolic potential and taxonomic composition of microbiota inhabiting the sodic soils in different plant communities. The soil samples were collected in the Pannonian steppe (Hungary, Central Europe) under extreme dry and wet weather conditions. The metabolic profiles of microorganisms were analyzed using the MicroResp method, the bacterial diversity was assessed by cultivation and next-generation amplicon sequencing based on the 16S rRNA gene. Catabolic profiles of microbial communities varied primarily according to the alkali vegetation types. Most members of the strain collection were identified as plant associated and halophilic/alkaliphilic species of Micrococcus, Nesterenkonia, Nocardiopsis, Streptomyces (Actinobacteria) and Bacillus, Paenibacillus (Firmicutes) genera. Based on the pyrosequencing data, the relative abundance of the phyla Proteobacteria, Actinobacteria, Acidobacteria, Gemmatimonadetes and Bacteroidetes also changed mainly with the sample types, indicating distinctions within the compositions of bacterial communities according to the sodic soil alkalinity-salinity gradient. The effect of weather extremes was the most pronounced in the relative abundance of the phyla Actinobacteria and Acidobacteria. The type of alkali vegetation caused greater shifts in both the diversity and activity of sodic soil microbial communities than the extreme aridity and moisture.
[biblio_abst_f] =>
[biblio_full_text] => 0
[biblio_url] =>
[biblio_issue] =>
[biblio_type_of_work] => Article
[biblio_accession_number] => WOS:000690472100001
[biblio_call_number] =>
[biblio_notes] => ISI Document Delivery No.: UI2VR
Times Cited: 1
Cited Reference Count: 68
Borsodi, Andrea K. Mucsi, Marton Krett, Gergely Szabo, Attila Felfoldi, Tamas Szili-Kovacs, Tibor
Hungarian Scientific Research FundOrszagos Tudomanyos Kutatasi Alapprogramok (OTKA) [K108572]; European Regional Development FundEuropean Commission; Hungarian Government [GINOP-2.3.2-15-2016-00056]
This research was supported by the Hungarian Scientific Research Fund [K108572]; the European Regional Development Fund and the Hungarian Government [GINOP-2.3.2-15-2016-00056].
1
Mdpi
Basel
2076-2607
[biblio_custom1] =>
[biblio_custom2] =>
[biblio_custom3] =>
[biblio_custom4] =>
[biblio_custom5] =>
[biblio_custom6] =>
[biblio_custom7] => 1673
[biblio_research_notes] =>
[biblio_number_of_volumes] =>
[biblio_short_title] => MicroorganismsMicroorganisms
[biblio_alternate_title] => Microorganisms
[biblio_original_publication] =>
[biblio_reprint_edition] =>
[biblio_translated_title] =>
[biblio_section] =>
[biblio_citekey] => 560
[biblio_coins] =>
[biblio_doi] =>
[biblio_issn] =>
[biblio_auth_address] => [Borsodi, Andrea K.; Mucsi, Marton; Krett, Gergely; Felfoldi, Tamas] Eotvos Lorand Univ, Dept Microbiol, Pazmany P Setany 1-C, H-1117 Budapest, Hungary. [Borsodi, Andrea K.; Szabo, Attila; Felfoldi, Tamas] Ctr Ecol Res, Inst Aquat Ecol, Karolina Ut 29, H-1113 Budapest, Hungary. [Mucsi, Marton; Szili-Kovacs, Tibor] Ctr Agr Res, Inst Soil Sci, Herman Otto Ut 15, H-1022 Budapest, Hungary.
Borsodi, AK (corresponding author), Eotvos Lorand Univ, Dept Microbiol, Pazmany P Setany 1-C, H-1117 Budapest, Hungary.; Borsodi, AK (corresponding author), Ctr Ecol Res, Inst Aquat Ecol, Karolina Ut 29, H-1113 Budapest, Hungary.; Szili-Kovacs, T (corresponding author), Ctr Agr Res, Inst Soil Sci, Herman Otto Ut 15, H-1022 Budapest, Hungary.
borsodi.andrea@ttk.elte.hu; mucsi.marton@atk.hu; gergely.krett@ttk.elte.hu; szabo.attila@ecolres.hu; tamas.felfoldi@ttk.elte.hu; szili-kovacs.tibor@atk.hu
[biblio_remote_db_name] =>
[biblio_remote_db_provider] =>
[biblio_label] =>
[biblio_access_date] =>
[biblio_refereed] =>
[biblio_md5] => 35214311cf60817de0f6f8e275e0b67d
[biblio_formats] => Array
(
[biblio_abst_e] => full_html
[biblio_abst_f] => full_html
[biblio_notes] => full_html
[biblio_research_notes] => full_html
[biblio_custom1] => full_html
[biblio_custom2] => full_html
[biblio_custom3] => full_html
[biblio_custom4] => full_html
[biblio_custom5] => full_html
[biblio_custom6] => full_html
[biblio_custom7] => full_html
[biblio_coins] => full_html
[biblio_auth_address] => full_html
)
[biblio_type_name] => Journal Article
[biblio_contributors] => Array
(
[0] => Array
(
[nid] => 560
[vid] => 678
[cid] => 1316
[auth_type] => 1
[auth_category] => 1
[rank] => 0
[merge_cid] => 0
[aka] => 0
[alt_form] => 0
[drupal_uid] =>
[name] => Borsodi, A. K.
[lastname] => Borsodi
[firstname] => A.
[prefix] =>
[suffix] =>
[initials] => K.
[affiliation] =>
[literal] => 0
[md5] => e78cd0528111094b9578b8db293e9ba2
)
[1] => Array
(
[nid] => 560
[vid] => 678
[cid] => 1052
[auth_type] => 1
[auth_category] => 1
[rank] => 1
[merge_cid] => 0
[aka] => 0
[alt_form] => 0
[drupal_uid] =>
[name] => Mucsi, M.
[lastname] => Mucsi
[firstname] => M.
[prefix] =>
[suffix] =>
[initials] =>
[affiliation] =>
[literal] => 0
[md5] => 9114a283a88cf8a92e6ca1a979f3053c
)
[2] => Array
(
[nid] => 560
[vid] => 678
[cid] => 1379
[auth_type] => 1
[auth_category] => 1
[rank] => 2
[merge_cid] => 0
[aka] => 0
[alt_form] => 0
[drupal_uid] =>
[name] => Krett, G.
[lastname] => Krett
[firstname] => G.
[prefix] =>
[suffix] =>
[initials] =>
[affiliation] =>
[literal] => 0
[md5] => 22298d538262feff6d9108ff99c0346d
)
[3] => Array
(
[nid] => 560
[vid] => 678
[cid] => 1318
[auth_type] => 1
[auth_category] => 1
[rank] => 3
[merge_cid] => 0
[aka] => 0
[alt_form] => 0
[drupal_uid] =>
[name] => Szabo, A.
[lastname] => Szabo
[firstname] => A.
[prefix] =>
[suffix] =>
[initials] =>
[affiliation] =>
[literal] => 0
[md5] => f78f738992518d7e8513a1670fb9652d
)
[4] => Array
(
[nid] => 560
[vid] => 678
[cid] => 1451
[auth_type] => 1
[auth_category] => 1
[rank] => 4
[merge_cid] => 0
[aka] => 0
[alt_form] => 0
[drupal_uid] =>
[name] => Felfoldi, T.
[lastname] => Felfoldi
[firstname] => T.
[prefix] =>
[suffix] =>
[initials] =>
[affiliation] =>
[literal] => 0
[md5] => 3878088a79d3134f5610f22b75335087
)
[5] => Array
(
[nid] => 560
[vid] => 678
[cid] => 1053
[auth_type] => 1
[auth_category] => 1
[rank] => 5
[merge_cid] => 0
[aka] => 0
[alt_form] => 0
[drupal_uid] =>
[name] => Szili-Kovacs, T.
[lastname] => Szili-Kovacs
[firstname] => T.
[prefix] =>
[suffix] =>
[initials] =>
[affiliation] =>
[literal] => 0
[md5] => 3e24ec74e9a1fd3291a9b3e05fb373dc
)
)
[biblio_keywords] => Array
(
[1724] => 16S rRNA gene
[714] => Bacterial diversity
[1828] => catabolic activity
[829] => CULTIVATION
[132] => diversity
[376] => dynamics
[187] => growth
[29] => microbial communities
[881] => Microbiology
[1829] => Pannonian steppe
[374] => plants
[830] => Pyrosequencing
[52] => rhizosphere
[1830] => salinity
[1357] => sp-nov.
[1831] => streptomyces
[1832] => tolerance
)
[body] => Array
(
)
[rdf_mapping] => Array
(
[rdftype] => Array
(
[0] => sioc:Item
[1] => foaf:Document
)
[title] => Array
(
[predicates] => Array
(
[0] => dc:title
)
)
[created] => Array
(
[predicates] => Array
(
[0] => dc:date
[1] => dc:created
)
[datatype] => xsd:dateTime
[callback] => date_iso8601
)
[changed] => Array
(
[predicates] => Array
(
[0] => dc:modified
)
[datatype] => xsd:dateTime
[callback] => date_iso8601
)
[body] => Array
(
[predicates] => Array
(
[0] => content:encoded
)
)
[uid] => Array
(
[predicates] => Array
(
[0] => sioc:has_creator
)
[type] => rel
)
[name] => Array
(
[predicates] => Array
(
[0] => foaf:name
)
)
[comment_count] => Array
(
[predicates] => Array
(
[0] => sioc:num_replies
)
[datatype] => xsd:integer
)
[last_activity] => Array
(
[predicates] => Array
(
[0] => sioc:last_activity_date
)
[datatype] => xsd:dateTime
[callback] => date_iso8601
)
)
[name] => clare.cameron
[picture] => 0
[data] => a:13:{s:16:"ckeditor_default";s:1:"t";s:20:"ckeditor_show_toggle";s:1:"t";s:14:"ckeditor_width";s:4:"100%";s:13:"ckeditor_lang";s:2:"en";s:18:"ckeditor_auto_lang";s:1:"t";s:19:"biblio_show_profile";i:0;s:19:"biblio_my_pubs_menu";i:0;s:21:"biblio_contributor_id";s:1:"0";s:22:"biblio_id_change_count";s:1:"0";s:17:"biblio_user_style";s:6:"system";s:18:"biblio_baseopenurl";s:0:"";s:18:"biblio_openurl_sid";s:0:"";s:19:"biblio_crossref_pid";s:0:"";}
[entity_view_prepared] => 1
)