| Title | Monitoring soil bacteria with community-level physiological profiles using Biolog™ ECO-plates in the Netherlands and Europe |
| Publication Type | Journal Article |
| Year of Publication | 2016 |
| Authors | Rutgers M., Wouterse M., Drost S.M, Breure A.M, Mulder C., Stone D., Creamer R.E, Winding A., Bloem J. |
| Journal | Applied Soil Ecology |
| Volume | 97 |
| Pagination | 23-35 |
| Date Published | Jan |
| Type of Article | Article |
| ISBN Number | 0929-1393 |
| Accession Number | WOS:000365997100004 |
| Keywords | Agriculture, biodiversity, biolog, classification, gradient, Indicator, metabolism, method, microbial communities, microbial community, microorganisms, MicroResp, patterns, soil, statistical-analysis, structural diversity, temperature |
| Abstract | Soil samples were analyzed with community-level physiological profiles (CLPP) using Biolog (TM) ECO-plates in the Netherlands Soil Monitoring Network (NSMN; 704 samples) and in a European-wide transect (73 samples). The selection of sites was based on a representative sample of major soil texture types, land uses and climate zones. This method for determination of CLPP was specifically designed to be applied in large and long-term monitoring activities. It encompassed a solution for the inoculum-density dependence of colour formation patterns in ECO-plates, through stepwise dilution to extinction of the bacterial inoculum. The CLPP in Dutch and European soil samples appeared to be reproducible and sensitive to land use and/or soil texture. Although the method is selective, CLPP based parameters correlated well with other microbial parameters and soil characteristics. Consistent patterns in CLPP and soil habitat characteristics are emerging, as brought about by environmental disturbances, land management and soil texture. The applicability of CLPP analysis in monitoring systems is discussed. (C) 2015 Elsevier B.V. All rights reserved. |
| Short Title | Appl. Soil Ecol.Appl. Soil Ecol. |
| Alternate Journal | Appl. Soil Ecol. |
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- Monitoring soil bacteria with community-level physiological profiles using Biolog™ ECO-plates in the Netherlands and Europe
Monitoring soil bacteria with community-level physiological profiles using Biolog™ ECO-plates in the Netherlands and Europe
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Times Cited: 118
Cited Reference Count: 60
Rutgers, Michiel Wouterse, Marja Drost, Sytske M. Breure, Anton M. Mulder, Christian Stone, Dorothy Creamer, Rachel E. Winding, Anne Bloem, Jaap
Winding, Anne/M-8958-2013; Breure, Anton M/C-3987-2011; Mulder, Christian/N-4726-2015
Winding, Anne/0000-0002-7491-4548; Mulder, Christian/0000-0001-5735-6989; Creamer, Rachel/0000-0003-3617-1357
European Commission within the EcoFINDERS project [FP7-264465]; RIVM (QESAP) [S/607022]; Ministry of Infrastructure and Environment within the RIVM project BEO [M/607406]
The technical assistance of Gerdit Greve, Willem Roelofs, Bea Wind, Eric Mulder, Olaf van den Broek, Bram van Liere (formerly all RIVM) and An Vos (Alterra, WUR), is highly appreciated. The analysis of the data presented in this manuscript was supported by the European Commission within the EcoFINDERS project (FP7-264465) and by the RIVM (QESAP S/607022). Access to data from the Netherlands Soil Monitoring Network was supported by the Ministry of Infrastructure and Environment within the RIVM project BEO (M/607406).
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